Taxon DOI
10.1601/tx.6702
Name
Lechevalier et al. 1986 emend. Tang et al. 2010
Taxonomic Rank
genus
Methodology
Nomenclatural Taxonomy [1980-2016]
Incertae sedis taxa are placed using SOSCC (Garrity and Lilburn 2008)
 
Parent
Taxon RecordName Record
Embley et al. 1989 emend. Labeda et al. 2011
Members
(Pittenger and Brigham 1956) Lechevalier et al. 1986
Oyuntsetseg et al. 2017
Mertz and Yao 1993
Lee and Hah 2001
Zhang et al. 2016
Tan et al. 2006
(Ōmura et al. 1983) Henssen et al. 1987
Wink et al. 2003
Zucchi et al. 2012
Majumdar et al. 2006
Zucchi et al. 2012
Tatar et al. 2013
Everest and Meyers 2012
Labeda 1995
Wink et al. 2004
Busarakam et al. 2017
Nie et al. 2012
Ding et al. 2007
Miao et al. 2012
Everest and Meyers 2012
Kim et al. 2002
(ex Celmer et al. 1977) Henssen et al. 1987
Zucchi et al. 2012
Tang et al. 2010
Lee 2006
Tamura et al. 2010
Everest and Meyers 2012
(sic) Goodfellow et al. 1997
Lee 2006
Xing et al. 2014
Labeda et al. 2003
Al-Musallam et al. 2003
Labeda et al. 2003
(Lechevalier et al. 1986) Stackebrandt et al. 2004
Camas et al. 2013
Bian et al. 2009
(Margalith and Beretta 1960) Lechevalier et al. 1986
de Boer et al. 1990
Lee et al. 2006
Groth et al. 2007
Ding et al. 2007
Huang et al. 2004
Tamura et al. 2010
Saintpierre-Bonaccio et al. 2005
Labeda et al. 2003
Tan et al. 2007
Souza et al. 2015
Bala et al. 2004
Everest et al. 2015
Zucchi et al. 2012 emend. Busarakam et al. 2016
Huang et al. 2001
(ex di Marco and Spalla 1957) Lechevalier et al. 1986
Carlsohn et al. 2007
Goodfellow et al. 2001
Guan et al. 2012
Duangmal et al. 2011
Everest et al. 2015
Klykleung et al. 2015
Lechevalier et al. 1986
Tseng et al. 2006
Chomchoei et al. 2011
Zucchi et al. 2012 emend. Busarakam et al. 2016
Chun et al. 1999
Zucchi et al. 2012
Wink et al. 2003
Albarracín et al. 2010
Lee 2009
Everest et al. 2013
Wink et al. 2003
Zucchi et al. 2012
Chen et al. 2010
None 2015
CrossRef
Digital Object Identifier
https://doi.org/10.1601/tx.6702
https://doi.org/10.1601/tx.6702
Type Status
Taxonomy
The taxonomic placement of this genus within the root Universal Root.

  Woese et al. 1990
  Woese et al. 1990
  Goodfellow 2012 non Actinobacteria Stackebrandt et al. 1997
  Krasil'nikov 1949 (Approved Lists 1980)
  Labeda and Goodfellow 2015
  Embley et al. 1989 emend. Labeda et al. 2011
  Lechevalier et al. 1986 emend. Tang et al. 2010

The taxonomy from the rank of class and below is based upon currently published taxonomic opinion. For a complete taxonomy, refer to The Taxonomic Outline of Bacteria and Archaea, Release 7.7.
Taxon Statistics
Based on the method of Garrity and Lilburn (2008).
Microbial Earth
 
Citation
When referring to this Abstract, please use its Digital Object Identifier and cite NamesforLife.
Taxon Abstract for the genus Amycolatopsis Lechevalier et al. 1986 emend. Tang et al. 2010. NamesforLife, LLC. Retrieved January 17, 2018. https://doi.org/10.1601/tx.6702.
This information was last reviewed on September 10, 2017.

References


  1. Duangmal K, Mingma R, Pathom-aree W, Thamchaipenet A, Inahashi Y, Matsumoto A, Takahashi Y. Amycolatopsis samaneae sp. nov., isolated from roots of Samanea saman (Jacq.) Merr. Int J Syst Evol Microbiol 2011; 61:951-955. https://doi.org/10.1099/ijs.0.022699-0 [PubMed].
  2. Kim B, Sahin N, Tan GY, Zakrzewska-Czerwinska J, Goodfellow M. Amycolatopsis eurytherma sp. nov., a thermophilic actinomycete isolated from soil. Int J Syst Evol Microbiol 2002; 52:889-894. https://doi.org/10.1099/ijs.0.02060-0 [PubMed].
  3. Zhang G, Wang L, Li J, Zhou Y. Amycolatopsis albispora sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 2016; 66:3860-3864. https://doi.org/10.1099/ijsem.0.001277 [PubMed].
  4. Al-Musallam AA, Al-Zarban SS, Fasasi YA, Kroppenstedt RM, Stackebrandt E. Amycolatopsis keratiniphila sp. nov., a novel keratinolytic soil actinomycete from Kuwait. Int J Syst Evol Microbiol 2003; 53:871-874. https://doi.org/10.1099/ijs.0.02515-0 [PubMed].
  5. Goodfellow M, Brown AB, Cai J, Chun J, Collins MD. Amycolatopsis japonicum sp. nov., an actinomycete producing, S,S-N,N'-ethylendiamminedisuccinic acid. Syst Appl Microbiol 1997; 20:78-84.
  6. Oyuntsetseg B, Cho S-H, Jeon SJ, Lee HB, Shin K-S, Kim I-S, Kim SB. Amycolatopsis acidiphila sp. nov., a moderately acidophilic species isolated from coal mine soil. Int J Syst Evol Microbiol 2017; 67:3387-3392. https://doi.org/10.1099/ijsem.0.002126 [PubMed].
  7. Tan GYA, Robinson S, Lacey E, Goodfellow M. Amycolatopsis australiensis sp. nov., an actinomycete isolated from arid soils. Int J Syst Evol Microbiol 2006; 56:2297-2301. https://doi.org/10.1099/ijs.0.64260-0 [PubMed].
  8. Lee SD, Kinkel LL, Samac DA. Amycolatopsis minnesotensis sp. nov., isolated from a prairie soil. Int J Syst Evol Microbiol 2006; 56:265-269. https://doi.org/10.1099/ijs.0.63907-0 [PubMed].
  9. Wink JM, Kroppenstedt RM, Ganguli BN, Nadkarni SR, Schumann P, Seibert G, Stackebrandt E. Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. Syst Appl Microbiol 2003; 26:38-46. https://doi.org/10.1078/072320203322337290 [PubMed].
  10. Carlsohn MR, Groth I, Tan GY, Schütze B, Saluz HP, Munder T, Yang J, Wink J, Goodfellow M. Amycolatopsis saalfeldensis sp. nov., a novel actinomycete isolated from a medieval alum slate mine. Int J Syst Evol Microbiol 2007; 57:1640-1646. https://doi.org/10.1099/ijs.0.64903-0 [PubMed].
  11. Tang S-K, Wang Y, Guan T-W, Lee J-C, Kim C-J, Li W-J. Amycolatopsis halophila sp. nov., a halophilic actinomycete isolated from a salt lake. Int J Syst Evol Microbiol 2010; 60:1073-1078. https://doi.org/10.1099/ijs.0.012427-0 [PubMed].
  12. Majumdar S, Prabhagaran SR, Shivaji S, Lal R. Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov. Int J Syst Evol Microbiol 2006; 56:199-204. https://doi.org/10.1099/ijs.0.63766-0 [PubMed].
  13. Chun J, Kim SB, Oh YK, Seong CN, Lee DH, Bae KS, Lee KJ, Kang SO, Hah YC, Goodfellow M. Amycolatopsis thermoflava sp. nov., a novel soil actinomycete from Hainan Island, China. Int J Syst Bacteriol 1999; 49:1369-1373. https://doi.org/10.1099/00207713-49-4-1369 [PubMed].
  14. Saintpierre-Bonaccio D, Amir H, Pineau R, Tan GYA, Goodfellow M. Amycolatopsis plumensis sp. nov., a novel bioactive actinomycete isolated from a New-Caledonian brown hypermagnesian ultramafic soil. Int J Syst Evol Microbiol 2005; 55:2057-2061. https://doi.org/10.1099/ijs.0.63630-0 [PubMed].
  15. Lee SD. Amycolatopsis ultiminotia sp. nov., isolated from rhizosphere soil, and emended description of the genus Amycolatopsis. Int J Syst Evol Microbiol 2009; 59:1401-1404. https://doi.org/10.1099/ijs.0.006577-0 [PubMed].
  16. Camas M, Sahin N, Sazak A, Spröer C, Klenk H-P. Amycolatopsis magusensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 2013; 63:1254-1260. https://doi.org/10.1099/ijs.0.042770-0 [PubMed].
  17. Lee SD, Hah YC. Amycolatopsis albidoflavus sp. nov. Int J Syst Evol Microbiol 2001; 51:645-650. https://doi.org/10.1099/00207713-51-2-645 [PubMed].
  18. Huang Y, Paściak M, Liu Z, Xie Q, Gamian A. Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source. Int J Syst Evol Microbiol 2004; 54:359-363. https://doi.org/10.1099/ijs.0.02685-0 [PubMed].
  19. Xing K, Liu W, Zhang Y-J, Bian G-K, Zhang W-D, Tamura T, Lee J-S, Qin S, Jiang J-H. Amycolatopsis jiangsuensis sp. nov., a novel endophytic actinomycete isolated from a coastal plant in Jiangsu, China. Antonie van Leeuwenhoek 2013; 103:433-439. https://doi.org/10.1007/s10482-012-9823-y [PubMed].
  20. de Boer L, Dijkhuizen L, Grobben G, Goodfellow M, Stackebrandt E, Parlett JH, Whitehead D, Witt D. Amycolatopsis methanolica sp. nov., a facultatively methylotrophic actinomycete. Int J Syst Bacteriol 1990; 40:194-204. https://doi.org/10.1099/00207713-40-2-194 [PubMed].
  21. Zucchi TD, Tan GYA, Goodfellow M. Amycolatopsis thermophila sp. nov. and Amycolatopsis viridis sp. nov., thermophilic actinomycetes isolated from arid soil. Int J Syst Evol Microbiol 2012; 62:168-172. https://doi.org/10.1099/ijs.0.029256-0 [PubMed].
  22. Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479-491. https://doi.org/10.1099/00207713-47-2-479.
  23. Tan GYA, Robinson S, Lacey E, Brown R, Kim W, Goodfellow M. Amycolatopsis regifaucium sp. nov., a novel actinomycete that produces kigamicins. Int J Syst Evol Microbiol 2007; 57:2562-2567. https://doi.org/10.1099/ijs.0.64974-0 [PubMed].
  24. Bala S, Khanna R, Dadhwal M, Prabagaran SR, Shivaji S, Cullum J, Lal R. Reclassification of Amycolatopsis mediterranei DSM 46095 as Amycolatopsis rifamycinica sp. nov. Int J Syst Evol Microbiol 2004; 54:1145-1149. https://doi.org/10.1099/ijs.0.02901-0 [PubMed].
  25. Henssen A, Kothe HW, Kroppenstedt RM. Transfer of Pseudonocardia azurea and "Pseudonocardia fastidiosa" to the genus Amycolatopsis, with emended species description. Int J Syst Bacteriol 1987; 37:292-295. https://doi.org/10.1099/00207713-37-3-292.
  26. No reference is available 2015
  27. Tatar D, Sazak A, Guven K, Cetin D, Sahin N. Amycolatopsis cihanbeyliensis sp. nov., a halotolerant actinomycete isolated from a salt mine. Int J Syst Evol Microbiol 2013; 63:3739-3743. https://doi.org/10.1099/ijs.0.050963-0 [PubMed].
  28. Everest GJ, Meyers PR. Evaluation of the antibiotic biosynthetic potential of the genus Amycolatopsis and description of Amycolatopsis circi sp. nov., Amycolatopsis equina sp. nov. and Amycolatopsis hippodromi sp. nov. J Appl Microbiol 2011; 111:300-311. https://doi.org/10.1111/j.1365-2672.2011.05058.x [PubMed].
  29. Huang Y, Qi W, Lu Z, Liu Z, Goodfellow M. Amycolatopsis rubida sp. nov., a new Amycolatopsis species from soil. Int J Syst Evol Microbiol 2001; 51:1093-1097. https://doi.org/10.1099/00207713-51-3-1093 [PubMed].
  30. Souza WR, Silva RE, Goodfellow M, Busarakam K, Figueiro FS, Ferreira D, Rodrigues-Filho E, Moraes LAB, Zucchi TD. Amycolatopsis rhabdoformis sp. nov., an actinomycete isolated from a tropical forest soil. Int J Syst Evol Microbiol 2015; 65:1786-1793. https://doi.org/10.1099/ijs.0.000176 [PubMed].
  31. Labeda DP. Amycolatopsis coloradensis sp. nov., the avoparcin, LL-AV290-producing strain. Int J Syst Bacteriol 1995; 45:124-127. https://doi.org/10.1099/00207713-45-1-124.
  32. Ding L, Hirose T, Yokota A. Amycolatopsis echigonensis sp. nov. and Amycolatopsis niigatensis sp. nov., novel actinomycetes isolated from a filtration substrate. Int J Syst Evol Microbiol 2007; 57:1747-1751. https://doi.org/10.1099/ijs.0.64791-0 [PubMed].
  33. Guan T-W, Xia Z-F, Tang S-K, Wu N, Chen Z-J, Huang Y, Ruan J-S, Li W-J, Zhang L-L. Amycolatopsis salitolerans sp. nov., a filamentous actinomycete isolated from a hypersaline habitat. Int J Syst Evol Microbiol 2012; 62:23-27. https://doi.org/10.1099/ijs.0.030031-0 [PubMed].
  34. Albarracín VH, Alonso-Vega P, Trujillo ME, Amoroso MJ, Abate CM. Amycolatopsis tucumanensis sp. nov., a copper-resistant actinobacterium isolated from polluted sediments. Int J Syst Evol Microbiol 2010; 60:397-401. https://doi.org/10.1099/ijs.0.010587-0 [PubMed].
  35. Everest GJ, le Roes-Hill M, Omorogie C, Cheung S-K, Cook AE, Goodwin CM, Meyers PR. Amycolatopsis umgeniensis sp. nov., isolated from soil from the banks of the Umgeni River in South Africa. Antonie van Leeuwenhoek 2013; 103:673-681. https://doi.org/10.1007/s10482-012-9851-7 [PubMed].
  36. Klykleung N, Tanasupawat S, Pittayakhajonwut P, Ohkuma M, Kudo T. Amycolatopsis stemonae sp. nov., isolated from a Thai medicinal plant. Int J Syst Evol Microbiol 2015; 65:3894-3899. https://doi.org/10.1099/ijsem.0.000509 [PubMed].
  37. Stackebrandt E, Kroppenstedt RM, Wink J, Schumann P. Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et al. 1986 as Amycolatopsis lurida sp. nov., comb. nov. Int J Syst Evol Microbiol 2004; 54:267-268. https://doi.org/10.1099/ijs.0.02937-0 [PubMed].
  38. Zucchi TD, Tan GYA, Bonda ANV, Frank S, Kshetrimayum JD, Goodfellow M. Amycolatopsis granulosa sp. nov., Amycolatopsis ruanii sp. nov. and Amycolatopsis thermalba sp. nov., thermophilic actinomycetes isolated from arid soils. Int J Syst Evol Microbiol 2012; 62:1245-1251. https://doi.org/10.1099/ijs.0.031039-0 [PubMed].
  39. Zucchi TD, Bonda ANV, Frank S, Kim B-Y, Kshetrimayum JD, Goodfellow M. Amycolatopsis bartoniae sp. nov. and Amycolatopsis bullii sp. nov., mesophilic actinomycetes isolated from arid Australian soils. Antonie van Leeuwenhoek 2012; 102:91-98. https://doi.org/10.1007/s10482-012-9716-0 [PubMed].
  40. Labeda DP, Donahue JM, Williams NM, Sells SF, Henton MM. Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas. Int J Syst Evol Microbiol 2003; 53:1601-1605. https://doi.org/10.1099/ijs.0.02691-0 [PubMed].
  41. Groth I, Tan GYA, González JM, Laiz L, Carlsohn MR, Schütze B, Wink J, Goodfellow M. Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb. Int J Syst Evol Microbiol 2007; 57:513-519. https://doi.org/10.1099/ijs.0.64602-0 [PubMed].
  42. Wink J, Gandhi J, Kroppenstedt RM, Seibert G, Sträubler B, Schumann P, Stackebrandt E. Amycolatopsis decaplanina sp. nov., a novel member of the genus with unusual morphology. Int J Syst Evol Microbiol 2004; 54:235-239. https://doi.org/10.1099/ijs.0.02586-0 [PubMed].
  43. Tseng M, Yang SF, Li WJ, Jiang CL. Amycolatopsis taiwanensis sp. nov., from soil. Int J Syst Evol Microbiol 2006; 56:1811-1815. https://doi.org/10.1099/ijs.0.64149-0 [PubMed].
  44. Tamura T, Ishida Y, Otoguro M, Suzuki K-i. Amycolatopsis helveola sp. nov. and Amycolatopsis pigmentata sp. nov., isolated from soil. Int J Syst Evol Microbiol 2010; 60:2629-2633. https://doi.org/10.1099/ijs.0.017871-0 [PubMed].
  45. Chen J, Su J-J, We Y-Z, Li Q-P, Yu L-Y, Liu H-Y, Zhang Y-Q, Zhang Y-Q. Amycolatopsis xylanica sp. nov., isolated from soil. Int J Syst Evol Microbiol 2010; 60:2124-2128. https://doi.org/10.1099/ijs.0.016865-0 [PubMed].
  46. Mertz FP, Yao RC. Amycolatopsis alba sp. nov., isolated from soil. Int J Syst Bacteriol 1993; 43:715-720. https://doi.org/10.1099/00207713-43-4-715 [PubMed].
  47. Nie G-X, Ming H, Li S, Zhou E-M, Cheng J, Tang X, Feng H-G, Tang S-K, Li W-J. Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil. Int J Syst Evol Microbiol 2012; 62:2650-2656. https://doi.org/10.1099/ijs.0.038125-0 [PubMed].
  48. Busarakam K, Brown R, Bull AT, Tan GYA, Zucchi TD, Da Silva LJ, De Souza WR, Goodfellow M. Classification of thermophilic actinobacteria isolated from arid desert soils, including the description of Amycolatopsis deserti sp. nov. Antonie van Leeuwenhoek 2016; 109:319-334. https://doi.org/10.1007/s10482-015-0635-8 [PubMed].
  49. Bian J, Li Y, Wang J, Song FH, Liu M, Dai HQ, Ren B, Gao H, Hu X, Liu ZH, Li WJ, Zhang LX. Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment. Int J Syst Evol Microbiol 2009; 59:477-481. https://doi.org/10.1099/ijs.0.000026-0 [PubMed].
  50. Chomchoei A, Pathom-aree W, Yokota A, Kanongnuch C, Lumyong S. Amycolatopsis thailandensis sp. nov., a poly(L-lactic acid)-degrading actinomycete, isolated from soil. Int J Syst Evol Microbiol 2011; 61:839-843. https://doi.org/10.1099/ijs.0.023564-0 [PubMed].
  51. Lee SD. Amycolatopsis jejuensis sp. nov. and Amycolatopsis halotolerans sp. nov., novel actinomycetes isolated from a natural cave. Int J Syst Evol Microbiol 2006; 56:549-553. https://doi.org/10.1099/ijs.0.63881-0 [PubMed].
  52. Miao Q, Qin S, Bian G-K, Yuan B, Xing K, Zhang Y-J, Li Q, Tang S-K, Li W-J, Jiang J-H. Amycolatopsis endophytica sp. nov., a novel endophytic actinomycete isolated from oil-seed plant Jatropha curcas L. Antonie van Leeuwenhoek 2011; 100:333-339. https://doi.org/10.1007/s10482-011-9588-8 [PubMed].
  53. Goodfellow M, Kim SB, Minnikin DE, Whitehead D, Zhou ZH, Mattinson-Rose AD. Amycolatopsis sacchari sp. nov., a moderately thermophilic actinomycete isolated from vegetable matter. Int J Syst Evol Microbiol 2001; 51:187-193. https://doi.org/10.1099/00207713-51-1-187 [PubMed].
  54. Lechevalier MP, Prauser H, Labeda DP, Ruan JS. Two new genera of nocardioform actinomycetes; Amycolata gen. nov. and Amycolatopsis gen. nov. Int J Syst Bacteriol 1986; 36:29-37. https://doi.org/10.1099/00207713-36-1-29.
  55. Everest GJ, le Roes-Hill M, Rohland J, Enslin S, Meyers PR. Amycolatopsis roodepoortensis sp. nov. and Amycolatopsis speibonae sp. nov.: antibiotic-producing actinobacteria isolated from South African soils. J Antibiot (Tokyo) 2014; 67:813-818. https://doi.org/10.1038/ja.2014.79 [PubMed].
CrossRef Member